docExtractor

Pytorch implementation of "docExtractor: An off-the-shelf historical document element extraction" paper (accepted at ICFHR 2020 as an oral)

Check out our paper and webpage for details!

If you find this code useful, don't forget to star the repo ⭐ and cite the paper:

@inproceedings{monnier2020docExtractor, title={{docExtractor: An off-the-shelf historical document element extraction}}, author={Monnier, Tom and Aubry, Mathieu}, booktitle={ICFHR}, year={2020}, }

Installation :construction_worker:

Prerequisites

Make sure you have Anaconda installed (version >= to 4.7.10, you may not be able to install correct dependencies if older). If not, follow the installation instructions provided at https://docs.anaconda.com/anaconda/install/.

1. Create conda environment

conda env create -f environment.yml conda activate docExtractor

2. Download resources and models

The following command will download:

• our trained model
• SynDoc dataset: 10k generated images with line-level page segmentation ground truth
• synthetic resources needed to generate SynDoc (manually collected ones and Wikiart dataset)
• IlluHisDoc dataset

./download.sh

NB: it may happen that gdown hangs, if so you can download them by hand, then unzip and move them to appropriate folders (see corresponding scripts):

• pretrained model gdrive link
• SynDoc gdrive link
• synthetic resource dropbox link
• wikiart source link
• IlluHisDoc dropbox link

How to use :rocket:

There are several main usages you may be interested in:

1. perform element extraction (off-the-shelf using our trained network or a fine-tuned one)
2. build our segmentation method from scratch
3. fine-tune network on custom datasets

Demo: in the demo folder, we provide a jupyter notebook and its html version detailing a step-by-step pipeline to predict segmentation maps for a given image.

1. Element extraction

CUDA_VISIBLE_DEVICES=gpu_id python src/extractor.py --input_dir inp --output_dir out

Main args - -i, --input_dir: directory where images to process are stored (e.g. raw_data/test) - -o, --output_dir: directory where extracted elements will be saved (e.g. results/output) - -t, --tag: model tag to use for extraction (default is our trained network) - -l, --labels: labels to extract (default corresponds to illustration and text labels) - -s, --save_annot: whether to save full resolution annotations while extracting

Additionals - -sb, --straight_bbox: whether to use straight bounding boxes instead of rotated ones to fit connected components - -dm, --draw_margin: Draw the margins added during extraction (for visual or debugging purposes)

NB: check src/utils/constant.py for labels mapping
NB: the code will automatically run on CPU if no GPU are provided/found

2. Build our segmentation method from scratch

This would result in a model similar to the one located in models/default/model.pkl.

a) Generate SynDoc dataset

You can skip this step if you have already downloaded SynDoc using the script above.

python src/syndoc_generator.py -d dataset_name -n nb_train --merged_labels

• -d, --dataset_name: name of the resulting synthetic dataset
• -n, --nb_train: nb of training samples to generate (0.1 x nb_train samples are generated for val and test splits)
• -m, --merged_labels: whether to merge all graphical and textual labels into unique illustration and text labels

b) Train neural network on SynDoc

CUDA_VISIBLE_DEVICES=gpu_id python src/trainer.py --tag tag --config syndoc.yml

3. Fine-tune network on custom datasets

To fine-tune on a custom dataset, you have to:

1. annotate a dataset pixel-wise: we recommend using VGG Image Anotator (link) and our ViaJson2Image tool
2. split dataset in train, val, test and move it to datasets folder
3. create a configs/example.yml config with corresponding dataset name and a pretrained model name (e.g. default)
4. train segmentation network with python src/trainer.py --tag tag --config example.yml

Then you can perform extraction with the fine-tuned network by specifying the model tag.

NB: val and test splits can be empty, you just won't have evaluation metrics

Annex tools :hammer_and_wrench:

1. ViaJson2Image - Convert VIA annotations into segmentation map images

python src/via_converter.py --input_dir inp --output_dir out --file via_region_data.json

NB: by default, it converts regions using the illustration label

2. SyntheticLineGenerator - Generate a synthetic line dataset for OCR training

python src/synline_generator.py -d dataset_name -n nb_doc

NB: you may want to remove text translation augmentations by modifying synthetic.element.TEXT_FONT_TYPE_RATIO.

3. IIIFDownloader - Download IIIF images data from manifest urls

python src/iiif_downloader.py -f filename.txt -o output_dir --width W --height H

• -f, --file: file where each line contains an url to a json manifest
• -o, --output_dir: directory where downloaded images will be saved
• --width and --height: image width and height respectively (default is full resolution)

NB: Be aware that if both width and height arguments are specified, aspect ratio won't be kept. Common usage is to specify a fixed height only.

Issues

[suggestion] Store datasets and models in a data archive

opened on 2023-01-20 10:36:39 by bencomp

It would be great if you could store generated models and datasets that you collected in an archive like Zenodo. Zenodo would give the dataset (which requires a bit of metadata) a DOI for easier citation and it provides stronger long-term promises than Google Drive or Dropbox. (IMHO providing Google Drive links for important data looks phishy, although I know many other projects do the same.)

Thanks for your consideration!