Run and time jupyter notebooks

ColCarroll, updated 🕥 2022-08-23 17:01:52

|Build Status| |Coverage Status|

======== Carpo ========

An irregular satellite of Jupyter.

A command line utility to run, profile, and save Jupyter notebooks.

Installation

Carpo may be installed from pypi <https://pypi.python.org/pypi/carpo>_: ::

pip install carpo

Tested against python 2.7, 3.4, 3.5, 3.6.

Quickstart

Use ::

carpo run path/to_notebook.ipynb

to run a notebook. ::

carpo show path/to_notebook.ipynb

will show data from past runs.

More depth

Carpo plays nicely with shell expansion:

.. image:: https://colindcarroll.com/img/carpo/carpo_show.png

Carpo has gives helpful messages when successfully running notebooks:

.. image:: https://colindcarroll.com/img/carpo/carpo_run.png

Carpo shows the cell and the error when a run fails:

.. image:: https://colindcarroll.com/img/carpo/carpo_error.png

Also, carpo plays nicely with git, and will remember if a notebook has been run:

.. image:: https://colindcarroll.com/img/carpo/carpo_git.png

Help

Includes help messages: ::

$ carpo --help Usage: carpo [OPTIONS] COMMAND [ARGS]...

Base for cli commands.

Options: --help Show this message and exit.

Commands: run Try to re-run all notebooks. show View status of notebooks

.. |Build Status| image:: https://travis-ci.org/ColCarroll/carpo.svg?branch=master :target: https://travis-ci.org/ColCarroll/carpo .. |Coverage Status| image:: https://coveralls.io/repos/github/ColCarroll/carpo/badge.svg?branch=master :target: https://coveralls.io/github/ColCarroll/carpo?branch=master

Issues

Bump nbconvert from 5.1.1 to 6.5.1

opened on 2022-08-23 17:01:49 by dependabot[bot]

Bumps nbconvert from 5.1.1 to 6.5.1.

Release notes

Sourced from nbconvert's releases.

Release 6.5.1

No release notes provided.

6.5.0

What's Changed

New Contributors

Full Changelog: https://github.com/jupyter/nbconvert/compare/6.4.5...6.5

6.4.3

What's Changed

New Contributors

Full Changelog: https://github.com/jupyter/nbconvert/compare/6.4.2...6.4.3

6.4.0

What's Changed

New Contributors

... (truncated)

Commits


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Bump mistune from 0.7.4 to 2.0.3

opened on 2022-07-29 22:26:08 by dependabot[bot]

Bumps mistune from 0.7.4 to 2.0.3.

Release notes

Sourced from mistune's releases.

Version 2.0.2

Fix escape_url via lepture/mistune#295

Version 2.0.1

Fix XSS for image link syntax.

Version 2.0.0

First release of Mistune v2.

Version 2.0.0 RC1

In this release, we have a Security Fix for harmful links.

Version 2.0.0 Alpha 1

This is the first release of v2. An alpha version for users to have a preview of the new mistune.

Version 0.8.4

  • Support an escaped pipe char in a table cell. #150
  • Fix ordered and unordered list. #152
  • Fix spaces between = in HTML tags
  • Add max_recursive_depth for list and blockquote.
  • Fix fences code block.
Changelog

Sourced from mistune's changelog.

Changelog

Here is the full history of mistune v2.

Version 2.0.4


Released on Jul 15, 2022

    

  • Fix url plugin in &lt;a&gt; tag
    • 

  • Fix * formatting
    • 



Version 2.0.3

Released on Jun 27, 2022

  • Fix table plugin
  • Security fix for CVE-2022-34749

Version 2.0.2


Released on Jan 14, 2022

Fix escape_url


Version 2.0.1

Released on Dec 30, 2021

XSS fix for image link syntax.

Version 2.0.0


Released on Dec 5, 2021

This is the first non-alpha release of mistune v2.


Version 2.0.0rc1

Released on Feb 16, 2021

Version 2.0.0a6


</tr></table>

... (truncated)

Commits
  • 3f422f1 Version bump 2.0.3
  • a6d4321 Fix asteris emphasis regex CVE-2022-34749
  • 5638e46 Merge pull request #307 from jieter/patch-1
  • 0eba471 Fix typo in guide.rst
  • 61e9337 Fix table plugin
  • 76dec68 Add documentation for renderer heading when TOC enabled
  • 799cd11 Version bump 2.0.2
  • babb0cf Merge pull request #295 from dairiki/bug.escape_url
  • fc2cd53 Make mistune.util.escape_url less aggressive
  • 3e8d352 Version bump 2.0.1
  • Additional commits viewable in compare view


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Bump notebook from 5.7.8 to 6.4.12

opened on 2022-06-16 23:11:26 by dependabot[bot]

Bumps notebook from 5.7.8 to 6.4.12.

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Bump ipython from 5.3.0 to 7.16.3

opened on 2022-01-21 19:03:46 by dependabot[bot]

Bumps ipython from 5.3.0 to 7.16.3.

Commits


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Bump py from 1.4.33 to 1.10.0

opened on 2021-04-20 17:04:44 by dependabot[bot]

Bumps py from 1.4.33 to 1.10.0.

Changelog

Sourced from py's changelog.

1.10.0 (2020-12-12)

  • Fix a regular expression DoS vulnerability in the py.path.svnwc SVN blame functionality (CVE-2020-29651)
  • Update vendored apipkg: 1.4 => 1.5
  • Update vendored iniconfig: 1.0.0 => 1.1.1

1.9.0 (2020-06-24)

  • Add type annotation stubs for the following modules:

    • py.error
    • py.iniconfig
    • py.path (not including SVN paths)
    • py.io
    • py.xml

    There are no plans to type other modules at this time.

    The type annotations are provided in external .pyi files, not inline in the code, and may therefore contain small errors or omissions. If you use py in conjunction with a type checker, and encounter any type errors you believe should be accepted, please report it in an issue.

1.8.2 (2020-06-15)

  • On Windows, py.path.locals which differ only in case now have the same Python hash value. Previously, such paths were considered equal but had different hashes, which is not allowed and breaks the assumptions made by dicts, sets and other users of hashes.

1.8.1 (2019-12-27)

  • Handle FileNotFoundError when trying to import pathlib in path.common on Python 3.4 (#207).

  • py.path.local.samefile now works correctly in Python 3 on Windows when dealing with symlinks.

1.8.0 (2019-02-21)

  • add "importlib" pyimport mode for python3.5+, allowing unimportable test suites to contain identically named modules.

  • fix LocalPath.as_cwd() not calling os.chdir() with None, when being invoked from a non-existing directory.

... (truncated)

Commits
  • e5ff378 Update CHANGELOG for 1.10.0
  • 94cf44f Update vendored libs
  • 5e8ded5 testing: comment out an assert which fails on Python 3.9 for now
  • afdffcc Rename HOWTORELEASE.rst to RELEASING.rst
  • 2de53a6 Merge pull request #266 from nicoddemus/gh-actions
  • fa1b32e Merge pull request #264 from hugovk/patch-2
  • 887d6b8 Skip test_samefile_symlink on pypy3 on Windows
  • e94e670 Fix test_comments() in test_source
  • fef9a32 Adapt test
  • 4a694b0 Add GitHub Actions badge to README
  • Additional commits viewable in compare view


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Bump pygments from 2.2.0 to 2.7.4

opened on 2021-03-29 16:57:39 by dependabot[bot]

Bumps pygments from 2.2.0 to 2.7.4.

Release notes

Sourced from pygments's releases.

2.7.4

  • Updated lexers:

    • Apache configurations: Improve handling of malformed tags (#1656)

    • CSS: Add support for variables (#1633, #1666)

    • Crystal (#1650, #1670)

    • Coq (#1648)

    • Fortran: Add missing keywords (#1635, #1665)

    • Ini (#1624)

    • JavaScript and variants (#1647 -- missing regex flags, #1651)

    • Markdown (#1623, #1617)

    • Shell

      • Lex trailing whitespace as part of the prompt (#1645)
      • Add missing in keyword (#1652)

    • SQL - Fix keywords (#1668)

    • Typescript: Fix incorrect punctuation handling (#1510, #1511)

  • Fix infinite loop in SML lexer (#1625)

  • Fix backtracking string regexes in JavaScript/TypeScript, Modula2 and many other lexers (#1637)

  • Limit recursion with nesting Ruby heredocs (#1638)

  • Fix a few inefficient regexes for guessing lexers

  • Fix the raw token lexer handling of Unicode (#1616)

  • Revert a private API change in the HTML formatter (#1655) -- please note that private APIs remain subject to change!

  • Fix several exponential/cubic-complexity regexes found by Ben Caller/Doyensec (#1675)

  • Fix incorrect MATLAB example (#1582)

Thanks to Google's OSS-Fuzz project for finding many of these bugs.

2.7.3

... (truncated)

Changelog

Sourced from pygments's changelog.

Version 2.7.4

(released January 12, 2021)

  • Updated lexers:

    • Apache configurations: Improve handling of malformed tags (#1656)

    • CSS: Add support for variables (#1633, #1666)

    • Crystal (#1650, #1670)

    • Coq (#1648)

    • Fortran: Add missing keywords (#1635, #1665)

    • Ini (#1624)

    • JavaScript and variants (#1647 -- missing regex flags, #1651)

    • Markdown (#1623, #1617)

    • Shell

      • Lex trailing whitespace as part of the prompt (#1645)
      • Add missing in keyword (#1652)

    • SQL - Fix keywords (#1668)

    • Typescript: Fix incorrect punctuation handling (#1510, #1511)

  • Fix infinite loop in SML lexer (#1625)

  • Fix backtracking string regexes in JavaScript/TypeScript, Modula2 and many other lexers (#1637)

  • Limit recursion with nesting Ruby heredocs (#1638)

  • Fix a few inefficient regexes for guessing lexers

  • Fix the raw token lexer handling of Unicode (#1616)

  • Revert a private API change in the HTML formatter (#1655) -- please note that private APIs remain subject to change!

  • Fix several exponential/cubic-complexity regexes found by Ben Caller/Doyensec (#1675)

  • Fix incorrect MATLAB example (#1582)

Thanks to Google's OSS-Fuzz project for finding many of these bugs.

Version 2.7.3

(released December 6, 2020)

... (truncated)

Commits
  • 4d555d0 Bump version to 2.7.4.
  • fc3b05d Update CHANGES.
  • ad21935 Revert "Added dracula theme style (#1636)"
  • e411506 Prepare for 2.7.4 release.
  • 275e34d doc: remove Perl 6 ref
  • 2e7e8c4 Fix several exponential/cubic complexity regexes found by Ben Caller/Doyensec
  • eb39c43 xquery: fix pop from empty stack
  • 2738778 fix coding style in test_analyzer_lexer
  • 02e0f09 Added 'ERROR STOP' to fortran.py keywords. (#1665)
  • c83fe48 support added for css variables (#1633)
  • Additional commits viewable in compare view


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Colin Carroll
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